species:   Scscl
pid:       PID1761
parent:    Ssc-milR-237
paralog:   
locus:     NW_001820829.1:552887-552942
matures:   ['UGUAUAGAGCUUCGUGCUCAAGA', '']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820829.1:552887-552942

16 out of bounds
9 alignments
3 proper strand
3 stranded perfect matches

*****************              *************************
AUGAAGGUCUAUAUAAUCAAGAUGGAUUCUCUUUGUAUAGAGCUUCGUGCUCAAGA
((((((.(((((((((...(((.....)))..))))))))).))))))........
---------------------------------UGUAUAGAGCUUCGUGCUCAAGA l=23 a=0 c
-------------------------------------------------------- l=0 a=0 c*
------------------AAGAUGGAUUCUCUUUGUAU------------------ l=20 a=2 ma
-------------------------------------------------------- l=0 a=0 ma*

------------------AAGAUGGAUUCUCUUUGUAU------------------ l=20 a=2 (ma)
----------------------UGGAUUCUCUUUGUAUAGAGCU------------ l=22 a=1 

mb-00010
ax-0011010
ku-01
ss-111110001000
fn-101
